Well after some testing I found that with my guardian the game would save everytime except if I used more skillpoints then I should have had.
Oh! i bet thats it....
I did that one of the only features I really wanted to test.
so yes all my skills were as far as I could go without leveling to next tier..
I bet thats the bug right there!
Well I can further confirm it. I went ahead and did all the quests to Hellborn station and gave myself more cash and attribute points but did not mess with the limitless skills and it saved.
Ok well thats exactly what I did then..
good troubleshooting man!
I'll steer clear of that feature for now I guess.really appreciate the help and the trainer.